Documentation for JIRA 5.1.x. Documentation for other versions of JIRA is available too. 
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If you ever want to restart JIRA from the Setup Wizard again:
bin\shutdown.bat (for Windows) or bin/shutdown.sh (for Linux/Solaris) in your JIRA Installation Directory (or the Apache Tomcat installation directory running the JIRA WAR distribution).dbconfig.xml file in your JIRA Home Directory.