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Crucible 4.0 Documentation
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A 'trusted application' is an application that Crucible will allow to access specific functions in Crucible, on behalf of any user — without the user logging in to Crucible. You can set up trusted apps authentication between FishEye, Crucible, JIRA (3.12 and later) and Confluence (2.7 and later) servers.
Application links with trusted apps authentication (as well as other types of authentication) can be set up by using the bundled Unified Application Links plugin.
For further instructions, please see the Application Links Documentation, particularly the Application Links Quick Start Guide.
Application Links Documentation
JIRA Integration in Crucible